map sR stop_codon to AIRR
The definition of the (not Mi-) AIRR stop_codon
field is :
True if the aligned sequence contains a stop codon.
In our DB we have the fields stop_codon
and stop_codon_sequence
from the tables CDR_FWR
and mutations
. which of both relate to the respective AIRR field?
Should we create a rule to map this field as something like, True if ANY stop_codon
value is True for the queried sequence?.
This will consider all values ("all$query") of stop_codon
/_sequence
fields for the queried seq_id
SR_TABLE_NAME | SR_COLUMN_NAME | SR_COL:VALUE |
---|---|---|
CDR_FWR | stop_codon | {"seq_id": “all$query”} |
mutations | stop_codon_sequence | {"seq_id": “all$query”} |