perl installation issues
On Fedora 31 (but I think these were already recurrent issues with f29)
-
The current step 27 of the INSTALLATION.md :
27. Install Bioperl: By calling `cpan` then `install CJFIELDS/BioPerl-1.6.924.tar.gz`
raises several errors of perl modules that can't be installed. As per the cpan installation guide installing cpanminus (sudo cpan App::cpanminus
) and then sudo cpanm Sys::SigAction
, sudo cpanm Bio::DB::EUtilities
,sudo cpanm XML::DOM::XPath
and sudo cpanm Bio::SeqIO
solves the issue.
- The
bcelldb_init.pm
needs to be added to PERL5LIB:
export PERL5LIB={PROJECT_DIR}/bin/
- From step 17, for the QC-scripts to work:
matplotlib needs to be installed as sudo yum install python2-matplotlib.x86_64
nothing provides MySQL-python
needs to be installed via sudo dnf install python2-mysql-debug-1.3.14-1.fc31.x86_64
Should this be reviewed for the original INSTALLATION.md
?