Help needed related to bash loop
Hi, I'm trying such construction in CI/CD script
for CASE in $NEW_CASES ; do export CASE_DIR=$(dirname $CASE) ; cd CASE_DIR && python3 -m snakemake --cores $SNAKEMAKE_CORES && python3 -m snakemake --report report.html ; done
It leads to error:
333 /var/spool/slurmd/job2254278/slurm_script: line 115: cd: CASE_DIR: No such file or directory
Is there any problem with
dirname? Couldn't be suggested another tool to extract directory name from filepath?