EM_Glossary issueshttps://codebase.helmholtz.cloud/em_glossary/em_glossary/-/issues2024-03-25T16:35:15+01:00https://codebase.helmholtz.cloud/em_glossary/em_glossary/-/issues/125minor update to term template2024-03-25T16:35:15+01:00Volker Hofmannminor update to term templatehttps://codebase.helmholtz.cloud/em_glossary/em_glossary/-/issues/124Bragg diffraction2024-03-25T17:14:05+01:00Volker HofmannBragg diffraction## description
during defining `Kikuchi diffraction` the term `Bragg diffraction` was identified as a required differentia and should therefore be defined here.
seeAlso: https://physicsopenlab.org/2018/01/18/bragg-diffraction/## description
during defining `Kikuchi diffraction` the term `Bragg diffraction` was identified as a required differentia and should therefore be defined here.
seeAlso: https://physicsopenlab.org/2018/01/18/bragg-diffraction/https://codebase.helmholtz.cloud/em_glossary/em_glossary/-/issues/123Fix camera_length.yaml2024-03-25T15:02:10+01:00Abril Azocar GuzmanFix camera_length.yamlThe sources are listed under the example key. See [here](https://codebase.helmholtz.cloud/em_glossary/em_glossary/-/blob/main/terms/camera_length.yaml?ref_type=heads#L25)The sources are listed under the example key. See [here](https://codebase.helmholtz.cloud/em_glossary/em_glossary/-/blob/main/terms/camera_length.yaml?ref_type=heads#L25)Volker HofmannVolker Hofmannhttps://codebase.helmholtz.cloud/em_glossary/em_glossary/-/issues/122remove capitalization in IRIs2024-03-22T17:10:03+01:00Volker Hofmannremove capitalization in IRIscurrent form of IRIs is `purls.helmholtz-metadaten.de/EMG/EMG_00000000`. The namespace in PIDA is however reserved as `purls.helmholtz-metadaten.de/emg/`. The URI is case sensitive and should therefore be set as non-capital in all yaml f...current form of IRIs is `purls.helmholtz-metadaten.de/EMG/EMG_00000000`. The namespace in PIDA is however reserved as `purls.helmholtz-metadaten.de/emg/`. The URI is case sensitive and should therefore be set as non-capital in all yaml fileshttps://codebase.helmholtz.cloud/em_glossary/em_glossary/-/issues/121Improve CI pipeline2024-03-22T14:19:06+01:00Volker HofmannImprove CI pipelinethe current actions of the CI pipeline could be improved by:
- moving to a more rigorous validation of the metadata schema (i.e. in pydantics)
- automatically generating IRIs based on what is in the repo already (or some file where the ...the current actions of the CI pipeline could be improved by:
- moving to a more rigorous validation of the metadata schema (i.e. in pydantics)
- automatically generating IRIs based on what is in the repo already (or some file where the "count" is saved)
- [adding a spellchecker to check yaml files]https://codebase.helmholtz.cloud/em_glossary/em_glossary/-/issues/120adjust schema for validation of yaml files2024-03-21T17:34:29+01:00Volker Hofmannadjust schema for validation of yaml filesthis is to implement suggestions from https://codebase.helmholtz.cloud/em_glossary/em_glossary_owl/-/issues/11this is to implement suggestions from https://codebase.helmholtz.cloud/em_glossary/em_glossary_owl/-/issues/11https://codebase.helmholtz.cloud/em_glossary/em_glossary/-/issues/119add subclassOf to all existing YAML files2024-03-19T13:16:46+01:00Volker Hofmannadd subclassOf to all existing YAML fileshttps://codebase.helmholtz.cloud/em_glossary/em_glossary/-/issues/118cleanup YAML files2024-03-18T21:40:53+01:00Volker Hofmanncleanup YAML filessome cleanup of the existing yaml files is required according to
- https://codebase.helmholtz.cloud/em_glossary/em_glossary_owl/-/issues/8
- https://codebase.helmholtz.cloud/em_glossary/em_glossary_owl/-/issues/7
- https://codebase.helmh...some cleanup of the existing yaml files is required according to
- https://codebase.helmholtz.cloud/em_glossary/em_glossary_owl/-/issues/8
- https://codebase.helmholtz.cloud/em_glossary/em_glossary_owl/-/issues/7
- https://codebase.helmholtz.cloud/em_glossary/em_glossary_owl/-/issues/6https://codebase.helmholtz.cloud/em_glossary/em_glossary/-/issues/117adjust schema2024-03-18T21:55:41+01:00Volker Hofmannadjust schemain order to allow multiple comments and to reflect hierarchy in the yaml files following changes will need to be made in the JSON file defining the schema:
- change type of field `comments` to array
- add field `subclassOf` with type st...in order to allow multiple comments and to reflect hierarchy in the yaml files following changes will need to be made in the JSON file defining the schema:
- change type of field `comments` to array
- add field `subclassOf` with type string to accomodate defintion of subclasses that can be used during automatic OWL buildhttps://codebase.helmholtz.cloud/em_glossary/em_glossary/-/issues/116(to be) importet terms2024-03-15T18:12:08+01:00Volker Hofmann(to be) importet terms- time period http://purl.obolibrary.org/obo/NCIT_C25616 set as "sameAs"/"EquivalentClass" as EMG:TimePeriod
-- time period http://purl.obolibrary.org/obo/NCIT_C25616 set as "sameAs"/"EquivalentClass" as EMG:TimePeriod
-https://codebase.helmholtz.cloud/em_glossary/em_glossary/-/issues/115update IRIs2024-03-18T21:02:11+01:00Volker Hofmannupdate IRIsin https://codebase.helmholtz.cloud/em_glossary/em_glossary_owl/-/issues/3#note_6255260 we found inconsistencies with how we established the namespace in the IRIs inside the yaml files.
This is to re-create them with the base URI https...in https://codebase.helmholtz.cloud/em_glossary/em_glossary_owl/-/issues/3#note_6255260 we found inconsistencies with how we established the namespace in the IRIs inside the yaml files.
This is to re-create them with the base URI https://purls.helmholtz-metadaten.de/hob/https://codebase.helmholtz.cloud/em_glossary/em_glossary/-/issues/114fix issues in current yaml files2024-02-21T13:48:39+01:00Volker Hofmannfix issues in current yaml files- [x] source exact, synonym, exact_synonym_en: > # the > character is not needed. The synonym ends up being "- emission source" instead of "emission source"
- [x] dynamic refocusing, abbreviation_en: a single abbreviation
- [ ] diffracti...- [x] source exact, synonym, exact_synonym_en: > # the > character is not needed. The synonym ends up being "- emission source" instead of "emission source"
- [x] dynamic refocusing, abbreviation_en: a single abbreviation
- [ ] diffraction, sources, https://en.wikipedia.org/wiki/ (added to !35 )https://codebase.helmholtz.cloud/em_glossary/em_glossary/-/issues/113remove .yaml template from directory "terms"2024-02-21T13:27:25+01:00Volker Hofmannremove .yaml template from directory "terms"the yaml file with the term template is creating conflicts during automatic mapping to OWL. Therefore it will be moved to the folder "schema"the yaml file with the term template is creating conflicts during automatic mapping to OWL. Therefore it will be moved to the folder "schema"https://codebase.helmholtz.cloud/em_glossary/em_glossary/-/issues/112backscattered electron2024-02-19T15:20:10+01:00Özlem Özkanbackscattered electron```yaml
labels:
label_en: backscattered electron
plural:
plural_en: backscattered electrons
acronyms:
acronym_en:BSE
iri: https://purls.helmholtz-metadaten.de/EMG/00000023
definitions:
definition_en: >
is a beam electron that...```yaml
labels:
label_en: backscattered electron
plural:
plural_en: backscattered electrons
acronyms:
acronym_en:BSE
iri: https://purls.helmholtz-metadaten.de/EMG/00000023
definitions:
definition_en: >
is a beam electron that leaves the specimen into the vacuum on the side of the incident beam after scattering.
contributors:
- https://orcid.org/0000-0002-1278-4928 # Peter Konijnenberg
- https://orcid.org/0009-0008-6410-7217 # Rasmus Schroeder
- https://orcid.org/0000-0001-6534-4195 # Helmut Kohl
- https://orcid.org/0000-0002-7117-5196 # Markus Kühbach
- https://orcid.org/0000-0002-6368-2067 # Christoph Pauly
- https://orcid.org/0000-0003-1965-7996 # Özlem Özkan
- https://orcid.org/0000-0002-5149-603X # Volker Hofmann
ratified: false
```https://codebase.helmholtz.cloud/em_glossary/em_glossary/-/issues/111update logo2023-11-02T20:23:17+01:00Volker Hofmannupdate logohttps://codebase.helmholtz.cloud/em_glossary/em_glossary/-/issues/110[correction] some merged yaml files are not schema conform2023-11-02T16:25:54+01:00Volker Hofmann[correction] some merged yaml files are not schema conformThe following files have non-schema conform fields
- electron probe
- "synonyms_en" -> related synonym
- beam
- "synonyms_en" -> related synonymThe following files have non-schema conform fields
- electron probe
- "synonyms_en" -> related synonym
- beam
- "synonyms_en" -> related synonymhttps://codebase.helmholtz.cloud/em_glossary/em_glossary/-/issues/109[discussion] Implementation of Glossary2023-12-19T11:16:12+01:00Volker Hofmann[discussion] Implementation of GlossaryThis is to discuss the requirements for an implemented of the EMGlossary. This includes both:
- a human friendly interface for browsing
- we have implemented a web-frontend for browsing the definitions. This is open for comments towar...This is to discuss the requirements for an implemented of the EMGlossary. This includes both:
- a human friendly interface for browsing
- we have implemented a web-frontend for browsing the definitions. This is open for comments towards adaption: https://em-glossary.vercel.app/
- a machine readible and actionable artefact
This can be also be a q/a - feel free to post any thoughts comments or questions here.https://codebase.helmholtz.cloud/em_glossary/em_glossary/-/issues/108Electron Backscatter Diffraction (EBSD)2023-10-30T14:23:41+01:00Peter KonijnenbergElectron Backscatter Diffraction (EBSD)Sometimes referred to as Electron Backscattered Diffraction. Kikuchi diffraction in thick samples, typically strongly inclinated towards the incident beam, to characterize the microstructure at the top surface of a bulk sample.
overlap ...Sometimes referred to as Electron Backscattered Diffraction. Kikuchi diffraction in thick samples, typically strongly inclinated towards the incident beam, to characterize the microstructure at the top surface of a bulk sample.
overlap with terms in #104 and #105https://codebase.helmholtz.cloud/em_glossary/em_glossary/-/issues/107Transmission Kikuchi diffraction (TKD)2024-03-12T14:15:36+01:00Peter KonijnenbergTransmission Kikuchi diffraction (TKD)Sometimes referred to as transmission EBSD (t-EBSD). Kikuchi diffraction in (thin) electron transparent samples at (near) zero tilt and at relatively high acceleration voltages, to characterize the microstructure at the lower sample surf...Sometimes referred to as transmission EBSD (t-EBSD). Kikuchi diffraction in (thin) electron transparent samples at (near) zero tilt and at relatively high acceleration voltages, to characterize the microstructure at the lower sample surface in high spatial resolution.
```yaml
labels:
label_en: Transmission Kikuchi diffraction
singular:
singular_en:
plural:
plural_en:
acronyms:
acronym_en:
abbreviations:
abbreviation_en: TKD
synonyms:
exact_synonym_en:
narrow_synonym_en:
broad_synonym_en:
related_synonym_en:
iri:
definitions:
definition_en: >
is Kikuchi diffraction in electron transparent samples at approximately zero tilt.
sources:
comments:
comment_en: >
Sometimes referred to as transmission EBSD (t-EBSD). It is used to characterize the microstructure at the lower sample surface in high spatial resolution.
examples:
seeAlso:
-
contributors:
- https://orcid.org/0000-0002-1278-4928 # Peter Konijnenberg
- https://orcid.org/0000-0001-6534-4195 # Helmut Kohl
- https://orcid.org/0000-0002-7117-5196 # Markus Kühbach
- https://orcid.org/0000-0003-1965-7996 # Özlem Özkan
- https://orcid.org/0000-0002-5149-603X # Volker Hofmann
ratified: false
```https://codebase.helmholtz.cloud/em_glossary/em_glossary/-/issues/106Kikuchi pattern2024-03-12T14:15:39+01:00Peter KonijnenbergKikuchi pattern```yaml
label: Kikuchi pattern
narrow_synonym_en: EBSP
definition: Pattern of line pairs or bands, generated by Kikuchi diffraction, formed on a detector plane.
``````yaml
label: Kikuchi pattern
narrow_synonym_en: EBSP
definition: Pattern of line pairs or bands, generated by Kikuchi diffraction, formed on a detector plane.
```Peter KonijnenbergPeter Konijnenberg